VISDB Viral Integration Site DataBase

VIS ID

TVIS10015975

Fusion event

HBV-LRIF1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1797

Orient

-

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

111502839/110960217 (Hg38)

Orient

-

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-4668-5p ; hsa-mir-3152-5p ; hsa-mir-6514-3p ; hsa-mir-4774-3p ; hsa-mir-6894-3p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-186-3p ; hsa-mir-3613-3p ; hsa-mir-5588-3p ; hsa-mir-548e-5p ; hsa-mir-1258 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6739-3p ; hsa-mir-3658 ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-2117 ; hsa-mir-4273 ; hsa-mir-5193 ; hsa-mir-660-3p ; hsa-mir-4279 ; hsa-mir-6882-3p ; hsa-mir-4524a-3p ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-1304-3p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-1182 ; hsa-mir-4524b-3p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1273g-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-576-3p ; hsa-mir-5683 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p

Nearest miRNA

hsa-mir-101-1/Upstream/1361250; hsa-mir-11399/Downstream/1501553;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/179406, chr1-CpG: 87/Downstream/3042

Upstream sequence

agaaacacacataaaacaaggttatgtattgaccagctgaaaaaaatgttgtgaccagaggcttggagaagcctagccttgtatttcctaaaagagcaat

Downstream sequence

gggtgagcatccactaattcagtgatcatagtgactttatggaatgtaactgctagaggtaatgagaatGTACTTACTTTTAGTTCTTTTCTACCTTTGA