Basic Information
VIS ID
TVIS10015982
Fusion event
HBV-chr17:q25.3 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1807
Orient
+
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80032811/82074935 (Hg38)
End
80032811/82074935 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10226/Upstream/381066; hsa-mir-4525/Downstream/161733;
Nearest TSS
ENST00000595228/Upstream/9048; ENST00000579979/Downstream/4443;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/8633, chr17-CpG: 56/Downstream/3912
Nearby gene
FASN
Nearest cancer related gene
FASN(OG, No orient)
Upstream sequence
ttgttttctttcgatttcccccctttccttctctcctcttttttttttttttTTCAGTTGTATTTTCCAATGTTGCTTAAACATCTGCaatatattggtt
Downstream sequence
agatgggatttcaccatgttggtcaggctggtctggaactcctgacctcatgatccacccacctcagcctcccaaagtgctgggataacaggcgtgagcc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate