Basic Information
VIS ID
TVIS10015983
Fusion event
HBV-LINC00871 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1807
Orient
-
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
46558776/46089573 (Hg38)
End
46558776/46089573 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00871
Nearest miRNA
hsa-mir-208a/Upstream/9137182; hsa-mir-1185-1/Downstream/1671422;
Nearest TSS
ENST00000550708/Upstream/25414; ENST00000556071/Downstream/381786;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/835974, chr14-CpG: 30/Downstream/562092
Upstream sequence
GAGAAGAAATAAGttttaagtatttgcctccattttagactaactctgcttatcgctgtgaaccaaccaatgatctctggctgcagctcagaagaaacac
Downstream sequence
atggccccagattctgcttctgatgagggcctcaagctgctttcattcatggtgaaagggaagccagcatttgaagagattacatggcaagagagaaagc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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