VISDB Viral Integration Site DataBase

VIS ID

TVIS10015986

Fusion event

HBV-GLG1 integration

Validated

Yes

Detection method

Alu PCR and sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1798

Orient

+

Chromosome

chr16

Cytoband

q23.1

Reference genome

Start

End

74529079/74495181 (Hg38)

Orient

-

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-21-5p ; hsa-mir-26a-5p ; hsa-mir-218-5p ; hsa-mir-5584-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-766-5p ; hsa-mir-3202 ; hsa-mir-5093 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-1827 ; hsa-mir-7515 ; hsa-mir-9500 ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-4695-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6851-5p ; hsa-mir-6836-5p ; hsa-mir-3689d ; hsa-mir-6132 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-3160-3p ; hsa-mir-6840-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4252 ; hsa-mir-6499-3p ; hsa-mir-891a-5p ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-7156-3p ; hsa-mir-7641 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-4695-3p ; hsa-mir-4679 ; hsa-mir-4691-3p ; hsa-mir-194-3p ; hsa-mir-2682-3p ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-3677-5p ; hsa-mir-4276 ; hsa-mir-4493 ; hsa-mir-4757-5p ; hsa-mir-5693 ; hsa-mir-627-3p ; hsa-mir-6744-3p ; hsa-mir-6781-3p ; hsa-mir-6878-3p

Nearest miRNA

hsa-mir-1225/Upstream/4464759; hsa-mir-11401/Downstream/2373755;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/87688, chr16-CpG: 67/Downstream/111389

Upstream sequence

CCAGCTGGTGTGCATGATGAACGAAAACAGCATTGATTACATTTCTCGGTTCAATGACCTGGCCCAAGAGCTGTCCATCGCTGAGCCTGGCCGCCGAGAA

Downstream sequence

tagctcggtgcaacctctgcctcctgggttcaagcaattctcctgcctcagagccccaagtagctgggattacaggcccccgccaccctgcccaactaat