VISDB Viral Integration Site DataBase

VIS ID

TVIS10015987

Fusion event

HBV-CLCC1 integration

Validated

Yes

Detection method

Alu PCR and sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1523

Orient

+

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

109497229/108954607 (Hg38)

Orient

+

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-15a-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6880-5p ; hsa-mir-6499-3p ; hsa-mir-508-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-7856-5p ; hsa-mir-3658 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-6128 ; hsa-mir-4307 ; hsa-mir-619-3p ; hsa-mir-323a-3p ; hsa-mir-33a-3p ; hsa-mir-5197-5p ; hsa-mir-649 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-34b-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-3675-3p ; hsa-mir-4293 ; hsa-mir-4684-5p ; hsa-mir-6771-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1057303; hsa-mir-11399/Downstream/644286;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/77191, chr1-CpG: 68/Downstream/8452

Upstream sequence

GAGGGGAAGGGACATTTTAGAGATTATGCTGAAATAATACATTTGCTTCCTTCCCTCTCTTCTTTTCATGTAACAGAGGAAGCAGACCAGCCCACTACAG

Downstream sequence

AGCCAGGCATGGTCCTGGACAGTGTGGAAGCAGGAGACACAACACCTCCTACCAAAAGGAAGAGCAAGTTCTCAGGCTTTGGCAAGATCTTCAAGCCCTG