Basic Information
VIS ID
TVIS10015990
Fusion event
HBV-LINC02564 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1623
Orient
-
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
12062/12062 (Hg38)
End
12062/12062 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02564
Nearest miRNA
hsa-mir-1-2/Downstream/100194;
Nearest TSS
ENST00000575820/Upstream/871; ENST00000580410/Downstream/2896;
Nearest CpG islands
chr18-CpG: 67/Target, None/Upstream, None/Downstream
Nearby gene
ROCK1P1
Upstream sequence
aatacctgttagaatatacttgtatgaataaatgatattataaatataagacATATGGAAGATGTTTTATTGCTCTGATGTCTACATATAAAAGTTGAAG
Downstream sequence
CCCGGCGGAGGAGGGCGATGCTCCCCGGGTAGGACAAACCGGTCACCTGGGCTGCGAGGGCGGCTTAGGGGCAGAAGCGGCGGTCCAGGGCCGCCTGGCG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate