Basic Information
VIS ID
TVIS10015991
Fusion event
HBV-chr4:q13.3 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1826
Orient
+
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
74248035/73382318 (Hg38)
End
74248035/73382318 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-12113/Upstream/7105390; hsa-mir-1243/Downstream/3191250;
Nearest TSS
ENST00000502981/Upstream/123109; ENST00000510166/Downstream/14796;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/122905, chr4-CpG: 20/Downstream/238009
Nearby gene
ALB
Upstream sequence
GCTCCATACAGGTCAGTCCAGCAGAGGCCTAAAGGGCTGAATGGGGAAACCAGGCGATTCCCACCCACACAAAACATCCTCCAGTCTCACTGTGATCAAG
Downstream sequence
ATCTGTTAGCTCTTTGTTGGTGTCAGCTGAGTTTCTTGTTGATCTCAGACAATGAGTTTACTCTTCTGTCACTCTCTTATGTTCAGTGATATATCTGTGA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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