Basic Information
VIS ID
TVIS10015992
Fusion event
HBV-chr8:p23.1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1823
Orient
-
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
9128103/9270593 (Hg38)
End
9128103/9270593 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-3674/Upstream/222075; hsa-mir-10400/Downstream/471079;
Nearest TSS
ENST00000518652/Upstream/10298; ENST00000520390/Downstream/54458;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/118750, chr8-CpG: 60/Downstream/285278
Upstream sequence
ATGCTGCGCACCAGTGATTTGAATAAGACTTGGGGAAGACCTTGGGGCCTGACATTTAATCTGAGAGCTTCTACCATGAAGGAGCCAAGCAGGATGGACG
Downstream sequence
aagaaattataaaaacattaatttggggaactaataaatgtccatgaagtcttcacagtttatgttcttctgccatggcttcagctggtccctccgttcg
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate