RUVBL1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015993
Fusion event
HBV-RUVBL1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1786
Orient
-
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
127809485/128090642 (Hg38)
End
127809485/128090642 (Hg38)
Orient
+
Location type
Intron
Target gene
RUVBL1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-193b-3p ; hsa-mir-197-3p
Nearest miRNA
hsa-let-7g/Upstream/503466; hsa-mir-12124/Downstream/756166;
Nearest TSS
ENST00000440867/Upstream/2831; ENST00000484438/Downstream/6854;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/13349, chr3-CpG: 49/Downstream/32833
Upstream sequence
TCCCAAAATACATATTGAGTACATGTTAGTTCAGACATGATGGGATGAGAGTGGGCACCATTGTAAATATCAAGAAAatatatttaggtagcagaattaa
Downstream sequence
GAAGAATTATAAAGATGAAATTCTATCATGATTCAAATCTCAGTATTTGGTGTGCCTGGAACCTTCACATTAAGCAAAATAACCTTTTAAAACTACATTT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate