Basic Information
VIS ID
TVIS10016001
Fusion event
HBV-chr11:q24.2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1794
Orient
-
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
126047081/126177186 (Hg38)
End
126047081/126177186 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7a-2/Upstream/2795674; hsa-mir-3167/Downstream/811272;
Nearest TSS
ENST00000527297/Upstream/16472; ENST00000527247/Downstream/29326;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/114078, chr11-CpG: 59/Downstream/34288
Nearby gene
FAM118B
Upstream sequence
AACCCTAACCTGGGAGAACAAGGTGAAGGGTAAATCTGAGAGCAGAGTATAAGATTCATTAGACAGAAATGCCAATTTATTGCAGTTGAAGAAACATTTC
Downstream sequence
TCTATCAATGGGAGAGAAGATGAGTTGGAGGAAAGACAAGGAAAGTAAAGGCTTTCCCTCAAAGGCCCTCCTGTCAGGTCCTAAAAGCAGCTTCTCCCAG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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