Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016002
Fusion event
HBV-RAB20 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1827
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
q34
Reference genome
End
111180761/110638139 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/1039172; hsa-mir-11399/Downstream/1823631;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30575, chr1-CpG: 199/Downstream/35483
Upstream sequence
TATTAAAAGAGAAAGTAAGATTTTAAAAAAGCCATGAATGTGAGCTTTGGGTATGTTCTTACACTACTATTTTGAAGGCTTTCTGGAAGATATGTACTCT
Downstream sequence
CAGTAGCTATTTCTATGACATTAGAAAAAAAAAATGATATGTAGTCTCAAGATGAGCTTCCAAGAAAAACCCTGAACTGAGTAAGTTTCCTTGCTAATGT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.