Basic Information
VIS ID
TVIS10016006
Fusion event
HBV-chr6:q25.3 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1781
Orient
+
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
156716036/156394902 (Hg38)
End
156716036/156394902 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10398/Upstream/448023; hsa-mir-1913/Downstream/384776;
Nearest TSS
ENST00000381078/Upstream/938999; ENST00000637910/Downstream/104064;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1080154, chr6-CpG: 41/Downstream/2035
Upstream sequence
CCTTTCCATGCTATTGGTTGCATGTAGTGTGCTTCTTTTGTTGTTTTGGGGGTGAAGTTAGATTACTTTTTGTCTTGATAAACAATTtcgtagattcaca
Downstream sequence
GTTTCACAAAGTCTGTAAAAGTCAGtttttttgtttgtttggttttctttttgagacagagtttcgctcttgttccccaggctggagtgcaatggtgcga
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate