Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016012
Fusion event
HBV-MYO1D integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1756
Orient
+
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
Start
End
31060524/32733506 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-218-5p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-636 ; hsa-mir-1914-5p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-520f-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p
Nearest miRNA
hsa-mir-1180/Upstream/383304; hsa-mir-10226/Downstream/4300239;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/213822, chr17-CpG: 78/Downstream/88896
Upstream sequence
CCTCCTCTACTGGCCCCCCAGTTCCTCCAGCCTGCTCTTGGCCCCCAGTTCCTCCAGCTTGCTCTACTGGCCCCCCAGTTCCTCCAGCCTGCTCTACTAG
Downstream sequence
aagacaggcagttttccttactgataatggggaattacttctagttcactctacatgtagccctttaaagactcaccattgtgtgtgtgtgtgtgcacag
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.