Basic Information
VIS ID
TVIS10016017
Fusion event
HBV-chr6:q24.1 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1798
Orient
+
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
139815988/139494851 (Hg38)
End
139815988/139494851 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10398/Upstream/1059557; hsa-mir-1202/Downstream/710401;
Nearest TSS
ENST00000381078/Upstream/20255; ENST00000414038/Downstream/182788;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/119410, chr6-CpG: 46/Downstream/2593485
Nearby gene
LINC01625
Upstream sequence
tacataataaattaccacaatcacagcagcttaaaccatcatctatttgttagctcatggttttgtagactagaagactggcacaatgtggctgtgttct
Downstream sequence
actggctctcaggaaataaaaaccttagactgcagcattggtcattttttgtggtgtaggcattcccaccatggccagtttcaatctaccagcatgaggt
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate