Basic Information
VIS ID
TVIS10016021
Fusion event
HBV-chr20:q13.33 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1819
Orient
-
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
59388030/60812974 (Hg38)
End
59388030/60812974 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-103a-2/Upstream/248349; hsa-mir-1-1/Downstream/1140572;
Nearest TSS
ENST00000382410/Upstream/51100; ENST00000441660/Downstream/1237;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/725069, chr20-CpG: 34/Downstream/154478
Nearby gene
LOC105372700(-4064) ;
Upstream sequence
CTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCTGTGGCACGAGGTGCTTTGTTCTCCGACCTG
Downstream sequence
GTTTAGATAATAATGCAATGTGTGATATTTTGATATTTATCATTCAAAATTAAAGAAAGCTGATATTTATATTACTAATGAGGCATTTCCACGGATTTGC
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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