Basic Information
VIS ID
TVIS10016025
Fusion event
HBV-chr10:p15.3 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1790
Orient
-
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
2930168/2887976 (Hg38)
End
2930168/2887976 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-5699/Upstream/811887; hsa-mir-107/Downstream/1103184;
Nearest TSS
ENST00000439456/Upstream/386173; ENST00000439575/Downstream/122555;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/114699, chr10-CpG: 298/Downstream/178482
Upstream sequence
gctagccatcaatctggtcccatgtccaagacccacctctggagttgactcccacctcctacctcagttgcacagtattgtaattaaacaaaataccatt
Downstream sequence
aaagtgtacactttaaattgggtgatatatggtatatgaatttcatctcaatatttaaaatgtcataattttctgaattaatctatagatttaatgcaat
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate