Basic Information
VIS ID
TVIS10016026
Fusion event
HBV-chr6:q16.3 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Orient
-
Host Sequence
Chromosome
chr6
Cytoband
q16.3
Reference genome
GRCh37/hg19
Start
104406882/103959007 (Hg38)
End
104406882/103959007 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10398/Upstream/4834311; hsa-mir-1202/Downstream/2825118;
Nearest TSS
ENST00000381078/Upstream/2030864; ENST00000635857/Downstream/773363;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2555909, chr6-CpG: 79/Downstream/900237
Upstream sequence
atcttaagtatgactctcctgcctaacaagggccctggtgattacactgggtccatttgggtaatccaggattatctcaggatccttaattcaatcactt
Downstream sequence
GCTCAAACTCACAAACTCATTCACACAGCTCAGGCAGCAGAGCAATTTCATCACAGCAGAGAGAAAGAGGAAGGAAGAGTCTGTGACGTGAAACTGTGAT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate