Basic Information
VIS ID
TVIS10016028
Fusion event
HBV-LINC02789 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1782
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
199248942/199279814 (Hg38)
End
199248942/199279814 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02789
Nearest miRNA
hsa-mir-101-1/Upstream/420661; hsa-mir-1182/Downstream/2439694;
Nearest TSS
ENST00000473358/Upstream/131216; ENST00000447034/Downstream/747788;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1120580, chr1-CpG: 36/Downstream/755532
Upstream sequence
TGTAGGGGTGCTGGGCTGTGGCCCCCGGTGCTGGATTATGGGCCTCCCGACACCCTCCCAGCAGGAGCGGGTCTCAGGTGCGCTGATGTTGCCTTCGACa
Downstream sequence
ggaggctaatgaaggggtctaggcaacaaatgatggcggcatggactacagcatctgcagtggagatggagagcaatggatggacccaggacttgctgat
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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