VISDB Viral Integration Site DataBase

VIS ID

TVIS10016041

Fusion event

HBV-MRPS21 integration

Validated

Yes

Detection method

Alu PCR and sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1815

Orient

+

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

150269757/150297333 (Hg38)

Orient

+

Location type

Intron

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-8081 ; hsa-mir-8070 ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-5089-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-137 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-5093 ; hsa-mir-2467-3p ; hsa-mir-4771 ; hsa-mir-3166 ; hsa-mir-508-3p ; hsa-mir-4790-3p ; hsa-mir-3607-5p ; hsa-mir-3919 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-4496 ; hsa-mir-3123 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-6860 ; hsa-mir-4290 ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-18a-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-6890-3p ; hsa-mir-1243 ; hsa-mir-1273e ; hsa-mir-1273f ; hsa-mir-151a-3p ; hsa-mir-185-5p ; hsa-mir-2114-3p ; hsa-mir-25-5p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-377-5p ; hsa-mir-4306 ; hsa-mir-4311 ; hsa-mir-4463 ; hsa-mir-4499 ; hsa-mir-4534 ; hsa-mir-455-3p ; hsa-mir-4644 ; hsa-mir-4695-5p ; hsa-mir-5192 ; hsa-mir-548a-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6500-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-6823-3p ; hsa-mir-6840-3p ; hsa-mir-8082

Nearest miRNA

hsa-mir-101-1/Upstream/1908970; hsa-mir-1182/Downstream/195012;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3064, chr1-CpG: 25/Downstream/24053

Upstream sequence

gctatttgcttaaaacctactctgcagaaggagctggaattataagaatgagccaaataaatcctctgctctcatggagtttacattctagtgggagggg

Downstream sequence

aagaccatgaacaataaacatccgtaactaggataatttcagtttgttctaggtgctgtgaagaaaattagcagagtgatgggctctatggtgactgagt