Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016042
Fusion event
HBV-KIAA0556 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Orient
+
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
Start
End
27614409/27603088 (Hg38)
Orient
-
Location type
Intron
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1225/Upstream/1577778; hsa-mir-11401/Downstream/787894;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/52849, chr16-CpG: 182/Downstream/459408
Upstream sequence
CAAGAGAAGTGTTAGAGTCTGAGTCtttttttttttttttttttttgagatagagtcagtcttgctctgttgcccaggctggagtgcagtggcacaatct
Downstream sequence
tggcttgggccatctggttgtcagaaatgcaaaagcctgaaaagacatctcagaaggccaatcaggatccacaatcatgatctgccttggggcagagtac
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.