hsa-mir-6856-3p _LIHC.png
SLC22A1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016044
Fusion event
HBV-SLC22A1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
415
Orient
+
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
160544973/160123941 (Hg38)
End
160544973/160123941 (Hg38)
Orient
-
Location type
Intron
Target gene
SLC22A1
miRNAs that regulate target gene
hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-4275 ; hsa-mir-4687-5p ; hsa-mir-6856-3p ; hsa-mir-6768-5p
Nearest miRNA
hsa-mir-10398/Upstream/1359188; hsa-mir-1913/Downstream/6385413;
Nearest TSS
ENST00000381078/Upstream/2005; ENST00000540443/Downstream/5820;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/32508, chr6-CpG: 55/Downstream/9688
Upstream sequence
TTCAATAAATTACATGAAAATTTATGCTGAGGTTACTTGGGCTGCATCATGATTTTTCCACTGACCTTGGTCCTCAtgtaatataaaggtaaggagcaca
Downstream sequence
GAGCTCTGAGCTgatcatagacgtcttctgggaggaggtggctttgagctgagcctcagctggtatttggaccagcaaggagaggggacaggtggagtag
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate