VISDB Viral Integration Site DataBase

VIS ID

TVIS10016049

Fusion event

HBV-PSD3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1632

Orient

+

Chromosome

chr8

Cytoband

p22

Reference genome

Start

End

18556593/18699083 (Hg38)

Orient

+

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-130b-5p ; hsa-mir-20b-5p ; hsa-mir-326 ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-95-5p ; hsa-mir-218-5p ; hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-765 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-216a-5p ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-4759 ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-8084 ; hsa-mir-200b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-520e ; hsa-mir-302a-3p ; hsa-mir-520a-3p ; hsa-mir-372-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p

Nearest miRNA

hsa-mir-124-1/Upstream/1017426; hsa-mir-10400/Downstream/3545883;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/311367, chr8-CpG: 99/Downstream/314396

Upstream sequence

GAAGTACAGAGATGTTTATAAAAGTGCTCCTTAAGAAGAAAACAAGGAACAACCAAAATAGCCAACTTACGGAAATGATTAAGCAAATTATACAGTAATT

Downstream sequence

tacagggttgtttctgggaacatccagagactgcttctcagcatcccttgcaactagattcctgctaaggaatgtgagtgaaagctatgtgtgccacttc