VISDB Viral Integration Site DataBase

VIS ID

TVIS10016050

Fusion event

HBV-DIP2A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1628

Orient

-

Chromosome

chr21

Cytoband

q21.33

Reference genome

Start

End

47958194/46538281 (Hg38)

Orient

-

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-423-5p ; hsa-mir-484 ; hsa-mir-125a-5p ; hsa-mir-142-3p ; hsa-mir-548c-3p ; hsa-mir-4435 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-3194-5p ; hsa-mir-1204 ; hsa-mir-132-5p ; hsa-mir-6504-3p ; hsa-mir-3934-5p ; hsa-mir-6858-3p ; hsa-mir-552-3p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-4496 ; hsa-mir-6124 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-583 ; hsa-mir-7641 ; hsa-mir-6778-3p ; hsa-mir-4695-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-548aw ; hsa-mir-513b-5p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-8063 ; hsa-mir-1179 ; hsa-mir-551b-5p ; hsa-mir-3161 ; hsa-mir-891b ; hsa-mir-550b-3p ; hsa-mir-3664-5p ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-3157-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-676-5p ; hsa-mir-4691-3p ; hsa-mir-5697 ; hsa-mir-6741-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-630 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469

Nearest miRNA

hsa-let-7c/Upstream/1059955;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/39466, chr21-CpG: 21/Downstream/60348

Upstream sequence

ATGAAGCGGGCAGATAGGAAAAGAGCAATATGGAGCTTCTAAGAAAAAATTAATGTTGGAAATGGATCTGAGGTTTTGATGTCTAAATTGTACCTCAGAG

Downstream sequence

TTGATTTTTGTGGAAAAAGCTTTGAGGGTTTGTTAGACTGCATGTGAGAGACGGCTGCAGAGAGCTTGTGACCTGGGAGCTAAGTGTTGTGTCTGTCTGT