Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016057
Fusion event
HBV-SFI1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1644
Orient
+
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
Start
End
31902909/31506923 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1286/Upstream/346804; hsa-let-7a-3/Downstream/114544;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/9812, chr22-CpG: 53/Downstream/123388
Upstream sequence
gtagagctacaaaccactgctcaaagaaatcagaggtgacacaaacaaatggaaaaacattccatgctcatgtataggaaaaatcaatatcatgaaaatg
Downstream sequence
gccatactgcccaaagcaatttacagattcaatgctgttaccattaactaccattgacattcttcacagaattagaaaaaactactttaaaattcatatg
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.