Basic Information
VIS ID
TVIS10016059
Fusion event
HBV-chr1:q25 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1843
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
q25
Reference genome
Start
End
(Hg38)
Orient
-
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
Nearest cancer related gene
OPCML(TSG, No orient)
Upstream sequence
ccattcccattttatacttgagaaaatggagatttggaaacatttaataacttacttagaattacacaCTCCCCTTGAGAAAGCTTATCTACTTTCTATA
Downstream sequence
TTTACTTTAGCATAACCCCATTATAACAGGGTCCAAAAAATTCAAATGTATAAACTAAGAGATTAATGACAGATTTCATTTAGACTCTATAGTATGTGTG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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