GRID2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016060
Fusion event
HBV-GRID2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1846
Orient
-
Host Sequence
Chromosome
chr4
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
93362013/92440862 (Hg38)
End
93362013/92440862 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
FRA4E
Target gene
GRID2
miRNAs that regulate target gene
hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-448
Nearest miRNA
hsa-mir-12113/Upstream/5140279; hsa-mir-1243/Downstream/6556525;
Nearest TSS
ENST00000502981/Upstream/136205; ENST00000515744/Downstream/382087;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/135006, chr4-CpG: 112/Downstream/1387482
Upstream sequence
gaaatccaatccaatgacctcacaagagtgttgctatagttctgtgctccttttcatctacccacacctttccttaccggccttagatgccatggtcaat
Downstream sequence
aacaacggtaattgtgggagactcaataaagagtgagtatagctgaaggagccgggaagcagaaagtatatgaatcaggtatgaggaagaaaatagattt
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate