Basic Information
VIS ID
TVIS10016064
Fusion event
HBV-C16orf47 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1806
Orient
+
Host Sequence
Chromosome
chr16
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
73562620/73528721 (Hg38)
End
73562620/73528721 (Hg38)
Orient
-
Location type
Intronic
Target gene
C16orf47
Nearest miRNA
hsa-mir-1225/Upstream/3498299; hsa-mir-11401/Downstream/3340215;
Nearest TSS
ENST00000527434/Upstream/29466; ENST00000567227/Downstream/15220;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/461829, chr16-CpG: 74/Downstream/767914
Upstream sequence
ggcacccagctgatgccagggcttttcaaggatagtttggtgagcaaggagctagggtctgggtgcccttgattggttggaaggtgcaatcacaggggtg
Downstream sequence
ctcttgttcagtcttgttttgaccaacaccaaacatttgaagcacagtatcaggatggagttatggtctgtagccagagaaccaaggtaactggcaccat
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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