Basic Information
VIS ID
TVIS10016068
Fusion event
HBV-chr12:q21.1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1836
Orient
-
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
75332295/74938515 (Hg38)
End
75332295/74938515 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7i/Upstream/5353692; hsa-mir-1178/Downstream/4480742;
Nearest TSS
ENST00000382841/Upstream/399882; ENST00000549762/Downstream/82454;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/400416, chr12-CpG: 68/Downstream/268786
Nearby gene
LOC105369842(-4134) ;
Upstream sequence
cttcttaaattttttttagttttagtagagatgaggtcttgctttgttggccaggttggtcttgaactcctggcctcaagtgatcctcctgcctttgcct
Downstream sequence
cccaaagtgctgggattacaggtgtaagccaccatggccagccttgcctcccaatttataactagccatacaacatctgaatcctccccacaccagtggg
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate