Basic Information
VIS ID
TVIS10016069
Fusion event
HBV-chr5:q15 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1599
Orient
+
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
GRCh37/hg19
Start
98036772/98701068 (Hg38)
End
98036772/98701068 (Hg38)
Orient
-
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/2621856; hsa-mir-103a-1/Downstream/2115414;
Nearest TSS
ENST00000502646/Upstream/539875; ENST00000505265/Downstream/67582;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1517127, chr5-CpG: 135/Downstream/67806
Upstream sequence
TGTAATATAAGAATCCATACAACCCAATTGCTTCAGTACAGATAAATTCTATGGCCACCTCATGCCTAAACTTTTTTTTTTTTTATTTTAGAGGAAATAA
Downstream sequence
tgccctggtagctgaagacaagggacataatctcttgggggctctatggccccacccaccacctgattctccctatactaccacagctgatgtactcttg
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate