hsa-mir-4791 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016073
Fusion event
HBV-TUT4 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1801
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
52892237/52426565 (Hg38)
End
52892237/52426565 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
FRA1B
Target gene
TUT4
miRNAs that regulate target gene
hsa-mir-196a-5p ; hsa-let-7b-5p ; hsa-mir-26a-5p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-203a-3p ; hsa-mir-216b-5p
Nearest miRNA
hsa-mir-12136/Upstream/590163; hsa-mir-101-1/Downstream/1627514;
Nearest TSS
ENST00000473358/Upstream/21937; ENST00000607321/Downstream/4516;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/21932, chr1-CpG: 115/Downstream/126021
Upstream sequence
CAACAACCACCACCACCACCAGCACTAAGCGCACAGGAGGAGGAAAACCTGGATTCATTATCCAACAAAGAGGCTGAAGCAGAAAAAAGATGTGGTACTT
Downstream sequence
GGCCTAAAAGAGTGGTGGCAAGAAAACCAGAAAGAACACATGTGGCACACTCTGAAGATCAATTCTACAGACCTTGGCCTACCAGCAACAAAAATGGTGA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate