Basic Information
VIS ID
TVIS10016075
Fusion event
HBV-LRRC52-AS1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1643
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
165493883/165524646 (Hg38)
End
165493883/165524646 (Hg38)
Orient
-
Location type
Intron
Target gene
LRRC52-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/3182006; hsa-mir-1182/Downstream/383275;
Nearest TSS
ENST00000473358/Upstream/22976; ENST00000294818/Downstream/3012;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/167555, chr1-CpG: 21/Downstream/73382
Upstream sequence
TGTGTGGATTTAACTACTTTAGGTGCATCTCTGTGGTTACGGGTTCCTGCAAAAGAGTTAAAACATTGTGTCTGCCTTTGGTAACATAATGTGTTTCTTT
Downstream sequence
Gtttctttttttttttttttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcgggatctcagctcactgcaaattcggc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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