hsa-mir-6777-3p _LIHC.png
OSBPL1A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016077
Fusion event
HBV-OSBPL1A integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1831
Orient
-
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
21942919/24362955 (Hg38)
End
21942919/24362955 (Hg38)
Orient
+
Location type
Intron
Target gene
OSBPL1A
miRNAs that regulate target gene
hsa-mir-340-5p ; hsa-mir-146a-5p ; hsa-mir-21-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-6731-3p ; hsa-mir-4301 ; hsa-mir-6777-3p ; hsa-mir-3938 ; hsa-mir-7844-5p ; hsa-mir-5003-3p
Nearest miRNA
hsa-mir-1-2/Upstream/41209; hsa-mir-122/Downstream/2228512;
Nearest TSS
ENST00000575820/Upstream/51423; ENST00000579347/Downstream/1832;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/90750, chr18-CpG: 75/Downstream/34356
Upstream sequence
CGACAGCAGCCCCACCTGGCATTCAGCGCGCTCCCGGGGGCAGAGGTCGCGGTGTCCTCACGCTGTGGTGCCGGCCTACAACCCCCACGCCGGGCTCGGG
Downstream sequence
tccccaaacaagtctgacCAGGGCAGGCCTGGCAGTGAAACCCAGCAGTTTTGCTGCCAGAGGGAAATGACTTGATTTAAAACAAAAGGCAAAAACCCAG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate