Basic Information
VIS ID
TVIS10016078
Fusion event
HBV-chr2:p15.1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1756
Orient
+
Host Sequence
Chromosome
chr2
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
11218239/11078113 (Hg38)
End
11218239/11078113 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-4261/Upstream/885442; hsa-mir-10b/Downstream/462492;
Nearest TSS
ENST00000437798/Upstream/166176; ENST00000381585/Downstream/53995;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/116751, chr2-CpG: 51/Downstream/77341
Nearby gene
PQLC3
Upstream sequence
AGACTGTTTCTGTGAGGTGCAAGAGGTCTCTGCATTGCAAACATGAAGACCAGACAACACATGGCTGGTTCACTCTTCATGAACACCTTCCCAGTCACTG
Downstream sequence
CAATTCCCTCAGAGCACCCCATGACTTCTGGACACAGAGTTGAAGAGGACAGGCAGTGAAGGAGCCAGCCACATCCTCAGGGTAAAGAGCAATGGAGACA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate