Basic Information
VIS ID
TVIS10016079
Fusion event
HBV-chr9:q33.1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1838
Orient
-
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
121370311/118608033 (Hg38)
End
121370311/118608033 (Hg38)
Orient
-
Nearest miRNA
hsa-let-7a-1/Upstream/4398504; hsa-mir-12126/Downstream/1636946;
Nearest TSS
ENST00000422679/Upstream/710777; ENST00000456032/Downstream/97927;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/862669, chr9-CpG: 97/Downstream/760775
Upstream sequence
acaaaaccaaagaattcacacaaaaactattaaagctaatttagcaaagttgcagagtacaatgtcaatatacaaatatcatttgcatctgtatacacaa
Downstream sequence
gagcctctgtgcctggccTACTAATCCTTTCTTTTAGGCAGGACCAGCATGGGGTGCCCACTCCCATTAGTGGGGCTTCCCAGCCCTGCCCCTCCCTCTG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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