VISDB Viral Integration Site DataBase

VIS ID

TVIS10016081

Fusion event

HBV-PDP2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1617

Orient

+

Chromosome

chr16

Cytoband

q22.1

Reference genome

Start

End

66920444/66886541 (Hg38)

Orient

-

Location type

Exon

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-mir-147a ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-541-5p ; hsa-mir-3190-3p ; hsa-mir-4257 ; hsa-mir-3911 ; hsa-mir-3927-3p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4650-3p ; hsa-mir-6831-5p ; hsa-mir-6833-5p ; hsa-mir-6818-5p ; hsa-mir-6734-5p ; hsa-mir-4291 ; hsa-mir-644a ; hsa-mir-1257 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-2467-3p ; hsa-mir-202-3p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-764 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-2115-3p ; hsa-mir-3154 ; hsa-mir-33a-3p ; hsa-mir-34a-3p ; hsa-mir-7977 ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-134-3p ; hsa-mir-5690 ; hsa-mir-7114-5p ; hsa-mir-3664-5p ; hsa-mir-4714-5p ; hsa-mir-514a-5p ; hsa-mir-744-3p ; hsa-mir-106a-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-183-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5197-5p ; hsa-mir-216a-5p ; hsa-mir-6514-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-8055 ; hsa-mir-6771-5p ; hsa-mir-6894-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-1282 ; hsa-mir-5707 ; hsa-mir-6746-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6818-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3065-5p ; hsa-mir-3613-3p ; hsa-mir-3529-3p ; hsa-mir-1252-5p ; hsa-mir-4476 ; hsa-mir-4533 ; hsa-mir-4760-3p ; hsa-mir-6715b-3p ; hsa-mir-6876-5p

Nearest miRNA

hsa-mir-1225/Upstream/9114189; hsa-mir-11401/Downstream/315780;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/5662, chr16-CpG: 27/Downstream/35499

Upstream sequence

CTGGGGAAGGCTTGAAGAAAGCCTGGAAATATACATTAATGCTAaggaaatgtgctatgaactcttattcctgaagtagtgacgatgtgttggccatagc

Downstream sequence

TTCAGCTGATAGGATCTATGCCTCTGGACCAGCTGAACTTACTGGTGCAGCTTTTTGTGCCCTCTACTGAGTCCCATTCCAGAAACTTTGAGCCATGCTA