Basic Information
VIS ID
TVIS10016084
Fusion event
HBV-chr22:q13.1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1768
Orient
+
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
38297565/37901558 (Hg38)
End
38297565/37901558 (Hg38)
Orient
-
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-mir-1286/Upstream/53784; hsa-let-7a-3/Downstream/66005;
Nearest TSS
ENST00000624155/Upstream/14854; ENST00000489812/Downstream/4099;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/51884, chr22-CpG: 98/Downstream/4389
Nearby gene
MICALL1
Upstream sequence
AACTGTTTCCTTCCCTGGCCTAGCCAGTCCTTCCCTGCCAGGATCCTGCCCCATGGCTAGACACCTGCAGCTGTTACCTGGGAAGAAATCAGAAAGGATT
Downstream sequence
CAgccagatgcaggggcttgtgcatataacttcagcattttgcgaggccaaagcaggtggattgcttgagtccaggagttcaagatcagcctgggcaaca
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate