Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016089
Fusion event
HBV-IQCA1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1837
Orient
-
Host Sequence
Chromosome
chr2
Cytoband
q37.2
Reference genome
End
237248683/236340040 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10b/Upstream/3789467; hsa-mir-149/Downstream/1170891;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/102107, chr2-CpG: 33/Downstream/167407
Upstream sequence
TCACAAAGGAAGCACATACATACATCAGGTCGAGAGTCGCAAGTGGTCAATTCAAACTTAAAAAAGGAATGCTATCTATGCCTGGTAATCTATTTTTGGT
Downstream sequence
tccatttatttaggcttcctttaaatttttcagcgtttttgtagttttcagaaaagtcttgcacttcttgtgtcaaaGAACTTTGTGAGAACAAtttctt
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.