Basic Information
VIS ID
TVIS10016090
Fusion event
HBV-chr13:q31.1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1789
Orient
+
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
79629589/79055454 (Hg38)
End
79629589/79055454 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1297/Upstream/1357338; hsa-mir-1267/Downstream/8563211;
Nearest TSS
ENST00000623511/Upstream/263147; ENST00000607864/Downstream/285758;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/396172, chr13-CpG: 65/Downstream/350415
Upstream sequence
CTGGAGCAAGTCTCCTGTTGCCACTGCAAACAATCAGGCCCAGCGCGAAGCAGAGGTGAGCAAGAGTGGAGTGTGGCAGACCAGGGCACCTGCTCTGCTC
Downstream sequence
TCGGGTAGAGAGTGGCAGACCAGGGCGCCCACTCTGCTCTCAGGGGTAGAGTGTGGCAGACCAGGGCGCCCGCTCTGCTCTCGGGTAGTTGGGttttttt
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate