Basic Information
VIS ID
TVIS10016091
Fusion event
HBV-chr12:q15 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1823
Orient
-
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
68339190/67945410 (Hg38)
End
68339190/67945410 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01479 ; LOC107984526
Nearest miRNA
hsa-let-7i/Upstream/1694253; hsa-mir-1178/Downstream/1327747;
Nearest TSS
ENST00000382841/Upstream/16147; ENST00000541715/Downstream/44035;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/295314, chr12-CpG: 54/Downstream/386657
Upstream sequence
ATGAAGCAGCCAATGCATGCAACAAGTTATATAGGCAATAATGTTGCTTTCAAAGGAGTttttgttttgttttgctttgtttttcaaatggagtctcact
Downstream sequence
ttgttgcccaggctggagtgcaatgacaccatctctgctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtggctg
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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