VISDB Viral Integration Site DataBase

VIS ID

TVIS10016113

Fusion event

HBV-MAGI2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

1775

Orient

-

Integrated sequence

GGGGGAACACCCGTGTGTCTTGGCCAAAATTCGCAGTCCCAAATCTCCAGTCACTCACCAACTTGTTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGT| |GTCTGCGGCGTTTTATCATCTTCCTCTGCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCT

Chromosome

chr7

Cytoband

q21.11

Reference genome

Start

End

78197562/78568245 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-655-3p ; hsa-mir-487b-3p ; hsa-mir-134-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-3944-5p ; hsa-mir-5690 ; hsa-mir-4660 ; hsa-mir-4704-5p ; hsa-mir-3912-5p ; hsa-mir-487a-3p

Nearest miRNA

hsa-mir-10525/Upstream/2652976; hsa-mir-10399/Downstream/13635770;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/527505, chr7-CpG: 26/Downstream/884004

Nearby gene

RPL13AP17(-208792) ; MIR548M(+1203009) ;

Upstream sequence

TTGAAATGGAAACAAAACTAACAAAAAGTTGGGAATACGTGGCCAtttataaagtactttcaaataagtcatctcatttgatcttcataatgatgtaaaa

Downstream sequence

agtcttatggatttaaataccatctagaatctaacagctttcaaatttatgtccctagctccaagctctgcactggactccagattcatgtatccagctg