CFP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016117
Fusion event
HBV-CFP integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
AY033073.1
Start
2199
Orient
+
Integrated sequence
TAGGGCTTTCCCCCACTGTCTGGCTTTCAGTTATAGTGATGATATGGTATTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTATACCGCTGTTACC| |AATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTCATAAAACAAAAAGATGGGGATATTCCCTTAATTTCATGGGATATGTAATTGGGAGTTGGGGCT
Host Sequence
Chromosome
chrX
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
47485234/47625835 (Hg38)
End
47485234/47625835 (Hg38)
Orient
+
Location type
Intronic
Target gene
CFP
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1587/Upstream/38330; hsa-let-7f-2/Downstream/2377313;
Nearest TSS
ENST00000429181/Upstream/5892; ENST00000591832/Downstream/745;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1870, chrX-CpG: 20/Downstream/11948
Nearby gene
SYN1(-5978) ; ELK1(+9685) ;
Upstream sequence
atggagttttcccatgttggccaggctggtctagaactcctgacctcaagtgatccatctgcctcggcctcccaaagtgctgggattacaggcttgagcc
Downstream sequence
TGACTGAACAGGTGACTGAGGGGCACAGAGGCTACGAATTATCCTCCAAGAACTTCTTTCTCATCTTCTTAGTTTCTCCCCACTTCCTGCAGCTGGGAGG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate