APOA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016120
Fusion event
HBV-APOA2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
AY033073.1
Start
1572
End
1629
Orient
+
Integrated sequence
CCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACA
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
161193138/161223348 (Hg38)
End
161193208/161223418 (Hg38)
Orient
-
Location type
Intronic
Target gene
APOA2
Nearest miRNA
hsa-mir-101-1/Upstream/1323269; hsa-mir-1182/Downstream/3768;
Nearest TSS
ENST00000473358/Upstream/8051; ENST00000465512/Downstream/7;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/20882, chr1-CpG: 54/Downstream/35269
Upstream sequence
gaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtggcaagtgcctataatcccaggtacttgggaggctgaggcaggagaattgcttg
Downstream sequence
GGGCGGCCTAGGAAGAGGGTGGTGGGGGTTTGGGGGACACTGAAGCCAAATGGGCTTCAGCTCCTCCCCAGGGATCTCCCTACCTGCTGCCCATTCCAAC
Target sequence
CCTTCAAGGCTGCAGATGGTGAGGAGTAGCACAGTTGCTGCGAGCAGCTTCATGTTGGTAACAGTGGGGA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate