VISDB Viral Integration Site DataBase

VIS ID

TVIS10016123

Fusion event

HBV-OSBPL5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

2995

Orient

-

Integrated sequence

CTCCCGTACCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGC| |ACGTCGCATGGAGACCACCGTGAACGCCCACTGGAACCTGCCCAAGGTCTTACAGGAGAGGACTCTTGGACTTTCAGCAATGTCAACGACCGACCTTGAG

Chromosome

chr11

Cytoband

p15.4

Reference genome

Start

End

3171133/3149903 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-744-5p ; hsa-mir-1539 ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-449b-3p

Nearest miRNA

hsa-mir-210/Upstream/976765; hsa-let-7a-2/Downstream/706159;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/29256, chr11-CpG: 42/Downstream/10441

Nearby gene

CARS(-92452) ; MRGPRG(+68040) ;

Upstream sequence

tagtaggataataagagataggtgttaaaaaaaaacccatacatatttacttaataaaattaactcaatgcttaaacgtatttgcaaattttgctactct

Downstream sequence

gtgaaatccaaaagtccagagaactacCATTTTAATGAATGCAACTTGAGATTTAATGTGATACAATGGATTTAATAAGATTTAATTAAATTCCATTCTG