LOC100130691 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016155
Fusion event
HBV-LOC100130691 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
AY033073.1
Start
1809
Orient
-
Integrated sequence
AGTCCCAAATCTCCAGTCACTCACCAACTTGTTGTCCTCCAATTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTGCATCCT| |GCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCATCAACCACCAGCACCGGACCA
Host Sequence
Chromosome
chr2
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
178244885/177380157 (Hg38)
End
178244885/177380157 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
LOC100130691
Nearest miRNA
hsa-mir-10b/Upstream/66275; hsa-mir-1244-1/Downstream/2480679;
Nearest TSS
ENST00000437798/Upstream/65220; ENST00000460342/Downstream/12487;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/115038, chr2-CpG: 64/Downstream/12342
Nearby gene
NFE2L2(-115026) ; AGPS(+12585) ;
Upstream sequence
ggcattagcttacagcatttccttctaactttgaaaacagaaactatgttgtctgactcaattttcattcttgaacctcattctctttcatCACTGAAGA
Downstream sequence
GTCAGTGGGTAGCTAACTACTGAGGATTGATTTTCCTGACGCTGGTGTTTAAGTGTCACCCAGAACTGGCATATAAAGTGGCTCATTCACCCAAGTATCT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate