VISDB Viral Integration Site DataBase

VIS ID

TVIS10016156

Fusion event

HBV-FBXO36 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

2879

Orient

-

Integrated sequence

GCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCCTCCCGGGGCCGCTTGGGGCTCTA| |CCGGCCGCTTCTCCGTCTCCCGTACCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCAC

Chromosome

chr2

Cytoband

q36.3

Reference genome

Start

End

230812102/229947386 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-6079 ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-671-5p ; hsa-mir-6828-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4786-3p ; hsa-mir-383-3p ; hsa-mir-3677-5p

Nearest miRNA

hsa-mir-10b/Upstream/2475199; hsa-mir-1244-1/Downstream/1415322;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/24437, chr2-CpG: 96/Downstream/120366

Nearby gene

TRIP12(-25447) ; SLC16A14(+87587) ;

Upstream sequence

catgtgtcagtagtcccagctactagggaggctgggaagaatcgcttgggaagcggaggtttgcagtgagccaagattggtcactgcactccagcctggg

Downstream sequence

AGTGATGTGCTGAAATGTAGGGCATAGTCAGTGGCTAGTATGAGATGATGCTGAAGGAGAGATGGACAGGGGTCACTCCTTGGCCTTCTATGCCACCCCA