Basic Information
VIS ID
TVIS10016160
Fusion event
HBV-chr20 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
AY033073.1
Start
702
Orient
-
Integrated sequence
AGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGAAACTTTACGGGGCTTTATTCTTCTACTGTACCTAACTTTAATCCT| |GATTGGCAAACTCCTTCTTTTCCTGACATTCATTTGCAGGAGGACATTGCTGATAGGTGTAAGCAATTTGTGGGACCCCTAACAGTAAATGAAAACAGGA
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62775846/64144493 (Hg38)
End
62775846/64144493 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1-1/Upstream/67483;
Nearest TSS
ENST00000382410/Upstream/37322; ENST00000610671/Downstream/7298;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/37775, chr20-CpG: 35/Downstream/34024
Nearby gene
NPBWR2(-37662) ; MYT1(+19980) ;
Upstream sequence
AAAGATTAAAATACATATATAGATTTGACATTTTTAAGAATAACGTACACTATGGCATCATTCAAAGGTGTCACTAAATGTGAATAAACAGAAGGGCAGG
Downstream sequence
aagtaatgcatgtgtgtgtgcatgtgttcaagtgatttgtgtgtgcatatgctacacatgtgtgctttcatgaacatatgtgtgtGAGTGGTGAGATTAA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate