VISDB Viral Integration Site DataBase

VIS ID

TVIS10016164

Fusion event

HBV-TATDN2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

2998

Orient

-

Integrated sequence

CCGTACCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACG| |TCGCATGGAGACCACCGTGAACGCCCACTGGAACCTGCCCAAGGTCTTACAGGAGAGGACTCTTGGACTTTCAGCAATGTCAACGACCGACCTTGAGGCA

Chromosome

chr3

Cytoband

p25.3

Reference genome

Start

End

10306019/10264335 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-423-3p ; hsa-mir-34a-5p ; hsa-mir-615-3p ; hsa-mir-222-3p ; hsa-mir-599 ; hsa-mir-7855-5p ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-4682 ; hsa-mir-4424 ; hsa-mir-873-5p ; hsa-mir-8485 ; hsa-mir-603 ; hsa-mir-329-3p ; hsa-mir-362-3p

Nearest miRNA

hsa-mir-4790/Upstream/5014080; hsa-let-7g/Downstream/16016;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/14908, chr3-CpG: 45/Downstream/56487

Nearby gene

IRAK2(-20592) ; LINC00852(+20083) ;

Upstream sequence

ATCCATCCATCCATGTCTGACCAGTTTCTCTTCTAGGTTAAGGGTTAGTTCCAGTCTTTGCCACAACTCCTCTTCCTCTTTTGTTCCAGAAAGTCAAAGC

Downstream sequence

catctgctttctagcctccagtgcgtgatcactgtagtctcttgttcttcctgttctggtgtttttgttattgtagaggggttttatttgttttttgttt