VISDB Viral Integration Site DataBase

VIS ID

TVIS10016165

Fusion event

HBV-SNRK integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

503

Orient

-

Integrated sequence

TACTTTTGGAAGAGAAACTGTTCTCGAATATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCTGCATATAGACCACCAAATGCCCCTATCTTATCA| |ACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCACCGCGTCGCAGAA

Chromosome

chr3

Cytoband

p22.1

Reference genome

Start

End

43366166/43324674 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-21-5p ; hsa-mir-193b-3p ; hsa-mir-192-3p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-938 ; hsa-mir-3065-5p ; hsa-mir-4772-3p ; hsa-mir-6886-3p ; hsa-mir-942-5p ; hsa-mir-4768-5p ; hsa-mir-6833-3p ; hsa-mir-340-5p ; hsa-mir-4789-5p ; hsa-mir-4789-3p ; hsa-mir-5011-5p ; hsa-mir-137 ; hsa-mir-6873-3p ; hsa-mir-6845-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-944 ; hsa-mir-6809-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-1251-5p ; hsa-mir-517-5p ; hsa-mir-153-5p ; hsa-mir-154-5p ; hsa-mir-4422

Nearest miRNA

hsa-mir-12127/Upstream/4186408; hsa-let-7g/Downstream/789538;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/37960, chr3-CpG: 18/Downstream/39253

Nearby gene

POMGNT2(-218601) ; ANO10(+41651) ;

Upstream sequence

cagggaccttgtcagtcttattcacaatatccccagcctctagaacaaggctggcacatagtagatgcacaaaaggtgtttgctgaatgaatggatGACT

Downstream sequence

CATGGAACCAACCAGGTTGTGTATTTATTGTAATTCCTAGAAAGATATACTGATTTTTTTAATACAGGAAAATAGGTTGCATACATTTTAAAACCACATG