VISDB Viral Integration Site DataBase

VIS ID

TVIS10016166

Fusion event

HBV-BSN integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

1546

Orient

-

Integrated sequence

TTTTCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAGCCCTGCTCAGAATACTGCCTCTGCCATATCGTCAACCTTCTCGAAGACTGGGGACCCTGTACCG| |AACATGGAGAACATCGCATCAGGACTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAAAATCCTCACAATACCACAGAGTCTAG

Chromosome

chr3

Cytoband

p21.31

Reference genome

Start

End

49646406/49608973 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-18a-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-8485 ; hsa-mir-3912-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-3941 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-1914-5p ; hsa-mir-4793-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-1286 ; hsa-mir-3619-3p ; hsa-mir-4436b-3p ; hsa-mir-4632-5p ; hsa-mir-591 ; hsa-mir-626 ; hsa-mir-6721-5p ; hsa-mir-6735-5p ; hsa-mir-6876-3p ; hsa-mir-6879-5p ; hsa-mir-7843-5p

Nearest miRNA

hsa-mir-12127/Upstream/334787; hsa-let-7g/Downstream/197164;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/53872, chr3-CpG: 110/Downstream/64562

Nearby gene

DAG1(-73358) ; APEH(+65028) ;

Upstream sequence

CCTTCACACCCTTTCTTTATTGTCTGTCAAGTGGTCTTGTCTATGTTTTCATACCCCTGAGGAATGGGAATGGGTTATGTTCTGGCtcatccaaataact

Downstream sequence

GCATGAGGCCATGAAAAGTCTGCAGGAAGGCATAGCAGATTTCTGGGAACTGAGGAATCTGGTGAGGGCCCATAGACGGCAGGATGCTTAAACCAGGTTT