VISDB Viral Integration Site DataBase

VIS ID

TVIS10016169

Fusion event

HBV-CCDC58 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

1608

Orient

-

Integrated sequence

TATCGTCAACCTTCTCGAAGACTGGGGACCCTGTACCGAACATGGAGAACATCGCATCAGGACTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTT| |CTTGTTGACAAAAATCCTCACAATACCACAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACACCCGTGTGTCTTGGCCAAAATTCG

Chromosome

chr3

Cytoband

q21.1

Reference genome

Start

End

122093822/122374975 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-629-3p ; hsa-mir-374a-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-2115-3p ; hsa-mir-944 ; hsa-mir-136-5p ; hsa-mir-361-5p ; hsa-mir-2681-5p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-16-1-3p ; hsa-mir-3163 ; hsa-mir-4282 ; hsa-mir-4668-5p

Nearest miRNA

hsa-let-7g/Upstream/1325260; hsa-mir-12124/Downstream/786819;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/144497, chr3-CpG: 41/Downstream/9029

Nearby gene

CSTA(-33007) ; FAM162A(+9200) ;

Upstream sequence

TGTGGATCACCTGGCTATTTCCATAGGCTCTAGAGATCATACATGGTAAAAGGGACAAGTTTTAGATAATGAAAACACAATCCAGAACACAAAGAGGAAA

Downstream sequence

catctgggctgggggtggtggctcatgcctgtaatcccagcaatttgagaggctgaggcaaggtaggaggattgcttgagctgaggaggttgaggcactg